GgaALTD0001528-2/2 @ galGal3
Alternative 5'ss
Description
NA
Coordinates
chr8:6394260-6395750:+
Coord C1 exon
chr8:6394260-6394313
Coord A exon
chr8:6394314-6394383
Coord C2 exon
chr8:6395670-6395750
Length
70 bp
Sequences
Splice sites
5' ss Seq
TAGGTACTC
5' ss Score
4.68
3' ss Seq
CTCCTGTTCCTGCTCCTCAGGTT
3' ss Score
10.18
Exon sequences
Seq C1 exon
CCAGTGGGGTGCGATGGGAGCCTGTATTCGGCCCGGACGATGGACAGATGCAGG
Seq A exon
GTGTGTGGAGGGGACGGCAGCACTTGTCACCGTGTCTCAGGCAGCTTCCGAAAGGCAGTCTCACAGATAG
Seq C2 exon
GTTACGTGTTCATCACCAGCATCCCTGCCGGTGCCATGGACATCCTCATCATGGAACGCAGGAAGACAGAAAACATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004032-6-4,7-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(11.8=33.3)
A:
NA
C2:
PF059869=ADAM_spacer1=FE(22.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGGGGTGCGATGGG
R:
CCAGGATGTTTTCTGTCTTCCTG
Band lengths:
135-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]