GgaEX0005374 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr8:6393570-6395750:+
Coord C1 exon
chr8:6393570-6393715
Coord A exon
chr8:6394260-6394383
Coord C2 exon
chr8:6395670-6395750
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTTTGCTCTCTTCCTTGCAGCCA
3' ss Score
12.11
5' ss Seq
TAGGTACTC
5' ss Score
4.68
Exon sequences
Seq C1 exon
ATGACTACACCAGCATCTCCAACAAGCCGTGTGACCTCCAGTGCACCACGCGGAATGGAGAGAGGCAGCTGATGGCCCGAGCCCAGGATGGTACCTCCTGCAAGGACAGGACCTACCAAGGGGTCTGCATCAATGGGAAGTGCGAG
Seq A exon
CCAGTGGGGTGCGATGGGAGCCTGTATTCGGCCCGGACGATGGACAGATGCAGGGTGTGTGGAGGGGACGGCAGCACTTGTCACCGTGTCTCAGGCAGCTTCCGAAAGGCAGTCTCACAGATAG
Seq C2 exon
GTTACGTGTTCATCACCAGCATCCCTGCCGGTGCCATGGACATCCTCATCATGGAACGCAGGAAGACAGAAAACATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004032-'5-4,'5-3,7-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.041 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF059869=ADAM_spacer1=PU(11.8=33.3)
C2:
PF059869=ADAM_spacer1=FE(22.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACTACACCAGCATCTCCA
R:
CAGGATGTTTTCTGTCTTCCTGC
Band lengths:
226-350
Functional annotations
There are 0 annotated functions for this event