DreEX0068159 @ danRer10
Exon Skipping
Gene
ENSDARG00000075487 | si:ch211-267e7.3
Description
si:ch211-267e7.3 [Source:ZFIN;Acc:ZDB-GENE-070912-265]
Coordinates
chr2:20916167-20929114:-
Coord C1 exon
chr2:20928969-20929114
Coord A exon
chr2:20926408-20926531
Coord C2 exon
chr2:20916167-20916270
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTGTTTTGATTGCAGGTA
3' ss Score
8.74
5' ss Seq
TAGGTATAC
5' ss Score
4.69
Exon sequences
Seq C1 exon
ATGATTACATCAACATCTCCAATAAGCCATGTGACCTCCAGTGCACTACAACCACAGGGGAGAGGCAACTACTGGTTCCTGCTCATGATGGGACGTTCTGCAGGGACGGCATTTACCAGGGGGTTTGCATTGAAGGCCAGTGTCAG
Seq A exon
GTAGTCGGGTGTGATGGGAAACTGTATTCCAGTAAAACCATAGACAAATGTGGAGTCTGTGGTGGAAACGGCGCTTCATGTTATCGTGTCTCAGGAACTTACCGGAAGGGGATCACACAGTTAG
Seq C2 exon
TAATGAGTTTGAGGTAGAATCGCTGGATCATGACGTCAGCATGTCGGACATGTATAGATGGAAGGTTTCTGCTTATGCACCTTGCAGCTCAACATGTACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075487_MULTIEX1-5/9=4-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.222
Domain overlap (PFAM):
C1:
NO
A:
PF059869=ADAM_spacer1=PU(11.9=33.3)
C2:
PF0009014=TSP_1=PU(25.9=38.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCAACATCTCCAATAAGCCA
R:
GTTGTACATGTTGAGCTGCAAGG
Band lengths:
242-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]