RnoEX0006918 @ rn6
Exon Skipping
Gene
ENSRNOG00000027742 | Adamtsl2
Description
ADAMTS-like 2 [Source:RGD Symbol;Acc:1305459]
Coordinates
chr3:5629536-5632612:+
Coord C1 exon
chr3:5629536-5629681
Coord A exon
chr3:5629813-5629936
Coord C2 exon
chr3:5632532-5632612
Length
124 bp
Sequences
Splice sites
3' ss Seq
TCTCTCATTGCTTCTTGCAGCCC
3' ss Score
8.69
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
ATGACTACATGCACATCTCCAGTAAGCCGTGTGACCTACACTGCACCACTGTGGACGGCCAACGGCAGCTCATGGTGCCGGCCCGAGACGGCACCTCCTGCAAGCTCACCGACCTGAGAGGGGTTTGCGTGTCTGGAAAATGTGAG
Seq A exon
CCCATTGGCTGTGATGGAGTGCTCTTCTCCACCCACACACTGGACAAGTGTGGTGTCTGCCAGGGGGACGGGAGCAGCTGCACCCACGTGACGGGCAACTACCGAAAGGGTGACAATCATCTTG
Seq C2 exon
GTTACTCCTTGGTGACCCACATTCCAGCTGGTGCCCGAGATATTCAGATTGTGGAGAGGAAGAAGTCGGCAGATGTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027742-'6-9,'6-7,8-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF059869=ADAM_spacer1=PU(11.9=33.3)
C2:
PF059869=ADAM_spacer1=FE(22.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACTACATGCACATCTCCAGT
R:
CAGCACATCTGCCGACTTCTT
Band lengths:
226-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]