MmuEX6099836 @ mm10
Exon Skipping
Gene
ENSMUSG00000036040 | Adamtsl2
Description
ADAMTS-like 2 [Source:MGI Symbol;Acc:MGI:1925044]
Coordinates
chr2:27084777-27087291:+
Coord C1 exon
chr2:27084777-27084922
Coord A exon
chr2:27085051-27085174
Coord C2 exon
chr2:27087211-27087291
Length
124 bp
Sequences
Splice sites
3' ss Seq
TCTCTCATTGCTTCTTGCAGCCC
3' ss Score
8.69
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
ATGACTACGTGCACATCTCCAGTAAGCCATGCGACCTACACTGCAGCACCGTGGACGGCCAACGGCAGCTCACGGTGCCGGCCCGAGACGGCACTTCCTGCAAGCTCACCGACCTGAGAGGGGTTTGCGTGTCTGGAAAATGTGAG
Seq A exon
CCCATTGGCTGTGATGGAGTACTCTTCTCCACCCACACGCTGGACAAGTGTGGTGTCTGCCAGGGGGACGGGAGCAGCTGCACCCACGTGACAGGCAACTACCGAAAGGGCAACAATCATCTTG
Seq C2 exon
GTTACTCCTTGGTGACCCATATTCCAGCTGGTGCCCGGGATATCCAGATTGTGGAGAGGAAGAAGTCAGCAGATGTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036040-'2-13,'2-9,12-13=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.032 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF059869=ADAM_spacer1=PU(11.9=33.3)
C2:
PF059869=ADAM_spacer1=FE(22.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGCACATCTCCAGTAAGC
R:
GCACATCTGCTGACTTCTTCCT
Band lengths:
218-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types