BtaEX6047348 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007492 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr11:104478105-104482482:+
Coord C1 exon
chr11:104478105-104478250
Coord A exon
chr11:104478384-104478507
Coord C2 exon
chr11:104482402-104482482
Length
124 bp
Sequences
Splice sites
3' ss Seq
CTCCGCCTCCCTTCCTGCAGCCC
3' ss Score
11.21
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ACGACTACGTGCACATCTCCAGCAAGCCATGTGACCTGCACTGCACCACCGTGGATGGCCAGCGGCAGCTCATGGTGCCCGCCCGCGACGGCACGTCCTGCAAGCTCGCCGACCTGCGCGGGGTCTGCGTGTCTGGAAAATGTGAG
Seq A exon
CCCATCGGCTGTGACGGGGTTCTCTTCTCCACGCACACGCTGGACAAGTGCGGCGTCTGCCAGGGCGACGGGAGCAGCTGCACCCACGTGACGGGCAACTACCGCAAAGGGAACACCCACCTGG
Seq C2 exon
GTTACTCTCTGGTCACCCACATCCCGGCTGGCGCCCGAGACATCCAGATCGTGGAGCGGAAGAAGTCTGCGGACGTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007492-'6-7,'6-6,7-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF059869=ADAM_spacer1=PU(11.9=33.3)
C2:
PF059869=ADAM_spacer1=FE(22.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTACGTGCACATCTCCAG
R:
CCAGCACGTCCGCAGACTT
Band lengths:
226-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]