DreEX6014349 @ danRer10
Exon Skipping
Gene
ENSDARG00000074033 | adamtsl2
Description
ADAMTS-like 2 [Source:ZFIN;Acc:ZDB-GENE-070705-558]
Coordinates
chr5:65236815-65239021:-
Coord C1 exon
chr5:65238876-65239021
Coord A exon
chr5:65237003-65237126
Coord C2 exon
chr5:65236815-65236895
Length
124 bp
Sequences
Splice sites
3' ss Seq
GCTGATGTGTAATTTTGCAGCCC
3' ss Score
5.91
5' ss Seq
TAGGTAACA
5' ss Score
6.25
Exon sequences
Seq C1 exon
ACGACTACGTTCATATCTCCAGTAATCCGTGTGACCTACACTGCACCACCTCTGATGGTCAAAGACAGCTGATGGTTCCTGCACGTGATGGGACGTCCTGCAAGTACAGCAACTACAGAGGCGTGTGTGTCGACGGCAAATGTGAA
Seq A exon
CCCATAGGATGTGACGGTGTCCTCTTCTCCCCCAACACCCTGGATAAGTGTGGCGTGTGTCAGGGAGACGGGAGCAGCTGCAGTCGAGTTACTGGGAACTTTCGCCGCGGGGCCTCGAGTCTAG
Seq C2 exon
GCTATACTTTCATAACTCAAATCCCCGAAGGATCATGGGACATCCAGGTTATTGAGAGGAAGAAGTCTGCAGATATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074033-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF059869=ADAM_spacer1=PU(11.9=33.3)
C2:
PF059869=ADAM_spacer1=FE(22.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTACGTTCATATCTCCAGT
R:
CCAGGATATCTGCAGACTTCTTCC
Band lengths:
226-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]