GgaEX6015340 @ galGal4
Exon Skipping
Gene
ENSGALG00000002955 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr17:6976402-6977392:+
Coord C1 exon
chr17:6976402-6976547
Coord A exon
chr17:6976646-6976769
Coord C2 exon
chr17:6977312-6977392
Length
124 bp
Sequences
Splice sites
3' ss Seq
GTACTCCGTGCCTTTTCTAGCCA
3' ss Score
8.09
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ATGACTATGTTCACATTTCTAGCAAGCCCTGTGACCTCCATTGCACCACTGTGGATGGTCAGAGACAATTAATGGTTCAGGCTCGGGATGGAACATCCTGCAAATACACTGATTTCCGAGGGGTTTGCGTGTCTGGAAAATGTGAG
Seq A exon
CCAATTGGCTGCGATGGCATTCTCTTTTCCACCCACACCTTGGATAAATGTGGTGTTTGCCAAGGAGATGGGAGCAGCTGCACTCATGTGACGGGGAGTTACCGGAAAGGAAACGCTCATCTGG
Seq C2 exon
GCTATTCCCTGGTAACGCACATTCCTGCTGGAGCAAGGGATATCCAGATAGTGGAACGGAAAAAATCTGCAGATGTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955-'11-12,'11-10,12-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF059869=ADAM_spacer1=PU(11.9=33.3)
C2:
PF059869=ADAM_spacer1=FE(22.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCACATTTCTAGCAAGCCCT
R:
TCCACTATCTGGATATCCCTTGCT
Band lengths:
194-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]