GgaEX0005373 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr8:6392554-6394383:+
Coord C1 exon
chr8:6392554-6392656
Coord A exon
chr8:6393570-6393715
Coord C2 exon
chr8:6394260-6394383
Length
146 bp
Sequences
Splice sites
3' ss Seq
GTCTGCCTCTGTCCCTTCAGATG
3' ss Score
11.96
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CCCTGCCCAGCCAACACAGCAAGCTTCAAACAACAGCAGTGCTCCAGTTTCAATGCCAAAGCCTTTGGGAAGCGGTACTACCACTGGATGCCCCTCTATCCAG
Seq A exon
ATGACTACACCAGCATCTCCAACAAGCCGTGTGACCTCCAGTGCACCACGCGGAATGGAGAGAGGCAGCTGATGGCCCGAGCCCAGGATGGTACCTCCTGCAAGGACAGGACCTACCAAGGGGTCTGCATCAATGGGAAGTGCGAG
Seq C2 exon
CCAGTGGGGTGCGATGGGAGCCTGTATTCGGCCCGGACGATGGACAGATGCAGGGTGTGTGGAGGGGACGGCAGCACTTGTCACCGTGTCTCAGGCAGCTTCCGAAAGGCAGTCTCACAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004032-'4-3,'4-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.041 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(1.8=2.9)
A:
NO
C2:
PF059869=ADAM_spacer1=PU(11.8=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCCAGCCAACACAG
R:
CTATCTGTGAGACTGCCTTTCGG
Band lengths:
226-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]