HsaEX6063775 @ hg19
Exon Skipping
Gene
ENSG00000197859 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:14631]
Coordinates
chr9:136404893-136406123:+
Coord C1 exon
chr9:136404893-136404995
Coord A exon
chr9:136405720-136405865
Coord C2 exon
chr9:136406000-136406123
Length
146 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTCTCCCTCCACCAGATG
3' ss Score
10.84
5' ss Seq
GAGGTTGTT
5' ss Score
0.25
Exon sequences
Seq C1 exon
GAGTGTCCGCCGGACGGGAGGAGCTTCCGCGAGGAGCAGTGCGTCTCCTTCAACTCCCACGTGTACAACGGGCGGACGCACCAGTGGAAGCCTCTGTACCCGG
Seq A exon
ATGACTATGTCCACATCTCCAGCAAACCGTGTGACCTGCACTGTACCACCGTGGACGGCCAGCGGCAGCTCATGGTCCCCGCCCGCGACGGCACATCCTGCAAGCTCACTGACCTGCGAGGGGTTTGCGTGTCTGGAAAATGTGAG
Seq C2 exon
CCCATCGGCTGTGACGGGGTGCTTTTCTCCACCCACACACTGGACAAGTGTGGCATCTGCCAGGGGGACGGTAGCAGCTGCACCCACGTGACGGGCAACTATCGCAAGGGGAATGCCCACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197859-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(1.8=2.9)
A:
NO
C2:
PF059869=ADAM_spacer1=PU(11.9=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACGGGAGGAGCTTCC
R:
GGCATTCCCCTTGCGATAGTT
Band lengths:
210-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)