GgaEX1006457 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr17:7647905-7649863:+
Coord C1 exon
chr17:7647905-7648007
Coord A exon
chr17:7649496-7649641
Coord C2 exon
chr17:7649740-7649863
Length
146 bp
Sequences
Splice sites
3' ss Seq
TCTATATCCTTTCCCCTTAGATG
3' ss Score
9.86
5' ss Seq
GAGGTTGTT
5' ss Score
0.25
Exon sequences
Seq C1 exon
GAGTGCCCCGCAAACGGAAGGAGCTTTCGAGAGGAGCAGTGTTCATCCTTTAACTCCCATGTGTATAATGGAAGAACGTATCAATGGAAACCTTTATACCCTG
Seq A exon
ATGACTATGTTCACATTTCTAGCAAGCCCTGTGACCTCCATTGCACCACTGTGGATGGTCAGAGACAATTAATGGTTCAGGCTCGGGATGGAACATCCTGCAAATACACTGATTTCCGAGGGGTTTGCGTGTCTGGAAAATGTGAG
Seq C2 exon
CCAATTGGCTGCGATGGCATTCTCTTTTCCACCCACACCTTGGATAAATGTGGTGTTTGCCAAGGAGATGGGAGCAGCTGCACTCATGTGACGGGGAGTTACCGGAAAGGAAACGCTCATCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955-'3-6,'3-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(1.8=2.9)
A:
NO
C2:
PF059869=ADAM_spacer1=PU(11.9=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAACGGAAGGAGCTTTCGA
R:
CCAGATGAGCGTTTCCTTTCC
Band lengths:
218-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]