BtaEX6047349 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007492 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr11:104477519-104478507:+
Coord C1 exon
chr11:104477519-104477621
Coord A exon
chr11:104478105-104478250
Coord C2 exon
chr11:104478384-104478507
Length
146 bp
Sequences
Splice sites
3' ss Seq
AGACCCCCGTCTCCCCGCAGACG
3' ss Score
10.81
5' ss Seq
GAGGTTGTT
5' ss Score
0.25
Exon sequences
Seq C1 exon
GAGTGTCCGCCGGACGGGAGGAGCTTCCGCGAGGAGCAGTGCATCTCCTTCAACTCCCGCGTGTACAACGGGCGCAGGCACCAGTGGAAGCCACTCTATCCGG
Seq A exon
ACGACTACGTGCACATCTCCAGCAAGCCATGTGACCTGCACTGCACCACCGTGGATGGCCAGCGGCAGCTCATGGTGCCCGCCCGCGACGGCACGTCCTGCAAGCTCGCCGACCTGCGCGGGGTCTGCGTGTCTGGAAAATGTGAG
Seq C2 exon
CCCATCGGCTGTGACGGGGTTCTCTTCTCCACGCACACGCTGGACAAGTGCGGCGTCTGCCAGGGCGACGGGAGCAGCTGCACCCACGTGACGGGCAACTACCGCAAAGGGAACACCCACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007492-'4-6,'4-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(1.8=2.9)
A:
NO
C2:
PF059869=ADAM_spacer1=PU(11.9=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACGGGAGGAGCTTCC
R:
GGTGTTCCCTTTGCGGTAGTT
Band lengths:
210-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]