DreEX6014348 @ danRer10
Exon Skipping
Gene
ENSDARG00000074033 | adamtsl2
Description
ADAMTS-like 2 [Source:ZFIN;Acc:ZDB-GENE-070705-558]
Coordinates
chr5:65237003-65239208:-
Coord C1 exon
chr5:65239106-65239208
Coord A exon
chr5:65238876-65239021
Coord C2 exon
chr5:65237003-65237126
Length
146 bp
Sequences
Splice sites
3' ss Seq
CCCTGTTTATGTTCCTGTAGACG
3' ss Score
9.1
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GAATGTCCTTCTACAGGGAGGAGTTTCAGAGAAGAGCAGTGCTGGTCCTTCAACTCTCAGGTTTACAATGGAAAGAATTACCACTGGAAACCTCTCTATCCTG
Seq A exon
ACGACTACGTTCATATCTCCAGTAATCCGTGTGACCTACACTGCACCACCTCTGATGGTCAAAGACAGCTGATGGTTCCTGCACGTGATGGGACGTCCTGCAAGTACAGCAACTACAGAGGCGTGTGTGTCGACGGCAAATGTGAA
Seq C2 exon
CCCATAGGATGTGACGGTGTCCTCTTCTCCCCCAACACCCTGGATAAGTGTGGCGTGTGTCAGGGAGACGGGAGCAGCTGCAGTCGAGTTACTGGGAACTTTCGCCGCGGGGCCTCGAGTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074033-'2-5,'2-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(1.8=2.9)
A:
NO
C2:
PF059869=ADAM_spacer1=PU(11.9=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTCCTTCTACAGGGAGGAGT
R:
CTAGACTCGAGGCCCCGC
Band lengths:
226-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]