RnoEX6016077 @ rn6
Exon Skipping
Gene
ENSRNOG00000027742 | Adamtsl2
Description
ADAMTS-like 2 [Source:RGD Symbol;Acc:1305459]
Coordinates
chr3:5628761-5629936:+
Coord C1 exon
chr3:5628761-5628863
Coord A exon
chr3:5629536-5629681
Coord C2 exon
chr3:5629813-5629936
Length
146 bp
Sequences
Splice sites
3' ss Seq
CCCTCTGTCTCGCCCCCCAGATG
3' ss Score
13.09
5' ss Seq
GAGGTTGTT
5' ss Score
0.25
Exon sequences
Seq C1 exon
GAGTGTCCACCGGATGGGAGGAGCTTCCGTGAAGAACAGTGTGTCTCCTTCAACTCCCGTGTGTATGACGGCCGGGCGTACCAGTGGAAGCCCCTTTACCCGG
Seq A exon
ATGACTACATGCACATCTCCAGTAAGCCGTGTGACCTACACTGCACCACTGTGGACGGCCAACGGCAGCTCATGGTGCCGGCCCGAGACGGCACCTCCTGCAAGCTCACCGACCTGAGAGGGGTTTGCGTGTCTGGAAAATGTGAG
Seq C2 exon
CCCATTGGCTGTGATGGAGTGCTCTTCTCCACCCACACACTGGACAAGTGTGGTGTCTGCCAGGGGGACGGGAGCAGCTGCACCCACGTGACGGGCAACTACCGAAAGGGTGACAATCATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027742-'4-7,'4-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(1.8=2.9)
A:
NO
C2:
PF059869=ADAM_spacer1=PU(11.9=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGGATGGGAGGAGCTTC
R:
CAAGATGATTGTCACCCTTTCGG
Band lengths:
219-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]