GgaINT0036817 @ galGal3
Intron Retention
Description
NA
Coordinates
chr8:6392554-6393715:+
Coord C1 exon
chr8:6392554-6392656
Coord A exon
chr8:6392657-6393569
Coord C2 exon
chr8:6393570-6393715
Length
913 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GTCTGCCTCTGTCCCTTCAGATG
3' ss Score
11.96
Exon sequences
Seq C1 exon
CCCTGCCCAGCCAACACAGCAAGCTTCAAACAACAGCAGTGCTCCAGTTTCAATGCCAAAGCCTTTGGGAAGCGGTACTACCACTGGATGCCCCTCTATCCAG
Seq A exon
GTGGGTTTTCACAGCTTCACGCAAAGGATCAGGGTGAGAAAACACCTGCAGGACTTTTCTCAGACACAGGAGGAGGACTGGGGGGCAAGGGATGGATGCTCCTGGCTGGTCCAGATGTGCTTCCTCTATGCTCCCTGCTTTGGAGAAATCATCCCCTTTCTTCACAGAGCCACCCCAGCCAGCCAGGCCTCTTCTCACACTGGCTTGGATCCTATGTCAGAAGGTGCCTGGCGAGCAGACACGGGGCACAGGCTTCTCTCAGGTGTCTTGGCTCACCAGCAGTCACCTCGGCAGAGTGGGCGCTCAGTCTGTGTGTGCCTCCTACCATCTCAGCCACCTCTGCCCCCCGGCGTGCTTCCCACTGGGATGGCGGTGGGTTATTCTGGACAGGATGTCCGTTCATTTCCTGCACGGAGGAGATAAATTGCTTCACACGGGTTGCCAGATGGCCCTCGAGGCCCAGATTCAGCTCCCCTGAGATATGACTGCCTTTCTGGACCTGCCTGTTTTTCCATTAGCTGCCAAGGGAACATAGAACATCTGCACCCCTAACTTACGTTGCTCAGCTGGAAGGGGTGCAGCTGGCCACAGCCCCACTGGCAATACCTCTCCTATGGGTCACACTTGCTCCTGTGTATTTATGCGTGGCCTGGGATCTGCTGATATGGATTCCCATATCTGGCACAGGGGATGGCACTGCAGAGGGGAGAGGTTTTGCCGTCAAGAAGCACTTCTATGTGTGGCCCCAGGTGCAGCCTCCTGCCACGATCCCTTTACTGCCACAAGGCCTGTAGCCTTGCAGTCTCACCTCCAGAAGCAAGAGCATGTAAGGTGATGTCAAACCAGCAGTGTGGATAAAGGCAAAGTCCCCTCCCTCACTGCCCATCACCTTGGTCTGCCTCTGTCCCTTCAG
Seq C2 exon
ATGACTACACCAGCATCTCCAACAAGCCGTGTGACCTCCAGTGCACCACGCGGAATGGAGAGAGGCAGCTGATGGCCCGAGCCCAGGATGGTACCTCCTGCAAGGACAGGACCTACCAAGGGGTCTGCATCAATGGGAAGTGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004032:ENSGALT00000006421:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(1.8=2.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCCAGCCAACACAG
R:
CGCACTTCCCATTGATGCAGA
Band lengths:
246-1159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]