HsaINT0004313 @ hg38
Intron Retention
Gene
ENSG00000197859 | ADAMTSL2
Description
ADAMTS like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr9:133539771-133540743:+
Coord C1 exon
chr9:133539771-133539873
Coord A exon
chr9:133539874-133540597
Coord C2 exon
chr9:133540598-133540743
Length
724 bp
Sequences
Splice sites
5' ss Seq
CGGGTACCT
5' ss Score
4.35
3' ss Seq
TCTTTGTCTCCCTCCACCAGATG
3' ss Score
10.84
Exon sequences
Seq C1 exon
GAGTGTCCGCCGGACGGGAGGAGCTTCCGCGAGGAGCAGTGCGTCTCCTTCAACTCCCACGTGTACAACGGGCGGACGCACCAGTGGAAGCCTCTGTACCCGG
Seq A exon
GTACCTGCCGCCCTGGGGACCCACCTTGCAGGGAGCTGACTGAGCTTTGGGGGTAGCCCTTCCGGCACCTGGGACCAAACTCGACGGGTGGGCAGGTGGGGAAATGGAGGTGGTCAGACGAAGAGCCAGGAATGAACCTGGGTCTCCTGAGCCCTGGCCCAGGGGTCTGTCCCCTCCCCCATGACCCATGACATCAACGCAGGACAGATTACGGGACTGAGTTCCCTGCAGACCTGACCTCTGACGGCAGTGGTGACTTGCTCACTTACTTACTGGCTCCTGGGCACAGACAGGAACCAGCCTAGACGATCCCAAACGGAGACTGCCCACACGGTCCCATGGAAAGCAAGTAGCTCAGGCAACAGTGTAAATGCTTCATCCTTCTCCTGCTCACCCGCAAGGGCCAGGGCTGGGGTGCCCAGGGCCAGCAGCACAGGGGTGTCGAGTTGGCTCAGACCTCCTGCAGAGGGGGAACCCCAGTATGGGTCTCAGGCGCTGCTCCCCACTCACGAGGAGGTAGAAGCTGGAACTCACGGGGTGTGGGCTGAGCCAGAAGACCCATCAGTTTCTGCCACTGAGACCTGGACAGGTTCCTTCTGTTCTCCAGGCCTGAGTTGCCCCATCTATGCAATGGGAGCTGTCTCAGAGGGAGGAAAAGGGAAGTCCTCTGAATCCGGCATTTCCTGCCCCGCTGAAACCTTCTGTCTTTGTCTCCCTCCACCAG
Seq C2 exon
ATGACTATGTCCACATCTCCAGCAAACCGTGTGACCTGCACTGTACCACCGTGGACGGCCAGCGGCAGCTCATGGTCCCCGCCCGCGACGGCACATCCTGCAAGCTCACTGACCTGCGAGGGGTTTGCGTGTCTGGAAAATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197859:ENST00000354484:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(1.8=2.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACGGGAGGAGCTTCC
R:
CTCACATTTTCCAGACACGCA
Band lengths:
239-963
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development