RnoINT0013633 @ rn6
Intron Retention
Gene
ENSRNOG00000027742 | Adamtsl2
Description
ADAMTS-like 2 [Source:RGD Symbol;Acc:1305459]
Coordinates
chr3:5628761-5629681:+
Coord C1 exon
chr3:5628761-5628863
Coord A exon
chr3:5628864-5629535
Coord C2 exon
chr3:5629536-5629681
Length
672 bp
Sequences
Splice sites
5' ss Seq
CGGGTACCT
5' ss Score
4.35
3' ss Seq
CCCTCTGTCTCGCCCCCCAGATG
3' ss Score
13.09
Exon sequences
Seq C1 exon
GAGTGTCCACCGGATGGGAGGAGCTTCCGTGAAGAACAGTGTGTCTCCTTCAACTCCCGTGTGTATGACGGCCGGGCGTACCAGTGGAAGCCCCTTTACCCGG
Seq A exon
GTACCTGAGCCTCAGGAATAAGCTCTATGGGTGGGCACGTGGGTAACTCGGGCTTAGAGCCAGGACCTGTTAAAACCTACGGTGGTCATCTCCAGAGCTCAGAGCAGATCCCACTTCTCTAGAAAACGGTCTGAGGTCTGTCCCCTCCCTCCCCCATGACCCATGACATCACCACTGACAGATTACAGAGCTGAGCTTCCTGCAGGGCTGCCCTCTGAGGTCAGGACTCTCCCACTGTCCCCAGGGCTTGGACAGGAATCAGCCCAGACAATCCTAAACGGGGACTGACCGAGGTCCCGAGGGACCAGGAACAGGCTCGCTGTTGCTCCCAGCCCACCTTTCTACCTCCCTCCCTCTCCCCACAGAAAGAAGAAACAAACTTTTCAGGCACAGGGTAAATGTTCTCTCCCCACTCAGTGGAAGTGCTGATGTGTCTGGTCCCTTGTGTGGACCACAAGGGTGATGCCCTCTCACAAGGAGGCAGAATTTAGAACTCAGAGCGTGGACCAGGCCAGATGACCTGTGTCTCACTTCATTTCTGCTACCAATACCGTGTCAGGTCCTCTCTTTTCAGGCTTCACTTTCCCCATCTGTGTAATGGGAAGGCGCTATCTCAGTGGGAGGGGTGACTCTGGCACCCCATTCCCTGATACCCTCTGTCTCGCCCCCCAG
Seq C2 exon
ATGACTACATGCACATCTCCAGTAAGCCGTGTGACCTACACTGCACCACTGTGGACGGCCAACGGCAGCTCATGGTGCCGGCCCGAGACGGCACCTCCTGCAAGCTCACCGACCTGAGAGGGGTTTGCGTGTCTGGAAAATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027742:ENSRNOT00000036995:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(1.8=2.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGGATGGGAGGAGCTTC
R:
CATTTTCCAGACACGCAAACCC
Band lengths:
238-910
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]