GgaINT0126462 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:7647905-7649641:+
Coord C1 exon
chr17:7647905-7648007
Coord A exon
chr17:7648008-7649495
Coord C2 exon
chr17:7649496-7649641
Length
1488 bp
Sequences
Splice sites
5' ss Seq
CTGGTAACA
5' ss Score
4.6
3' ss Seq
TCTATATCCTTTCCCCTTAGATG
3' ss Score
9.86
Exon sequences
Seq C1 exon
GAGTGCCCCGCAAACGGAAGGAGCTTTCGAGAGGAGCAGTGTTCATCCTTTAACTCCCATGTGTATAATGGAAGAACGTATCAATGGAAACCTTTATACCCTG
Seq A exon
GTAACAAGACATTCTTTGTGTGTTTCATAATGCTTAGCCAAAATGTTTTGATAGTTATGATGCTATAGACTGTGGGAAGGCTCCTCCTCTGCTGTTTTGAAGTGACTTTTGTCAGGGATGCAATCAGCTGCCTCCCAGGTTCAAAGGAGGGCTTTCCAGCTGTGGGGTTACTTAAACATAAAACAACAAAACCTATTTGTGACAGAATCCTCCAGCTTGTTTTGGTCACTGCTCCCAAGGAAGGCAGGCCGGAGGATGGGGATGTGGGGTGATGCTCTGTGCTGGCAGGGAGCATCCACCTCACCCAGTGTGTGGTGAGCTGGGGCTGCTGCTGGCTGCAGTGCGTTCCTGTGACATTTGCTCACTCCCACACAACGTGTGGGCTCTGCCAAATGTCACCGAGATGGAGTCAGTTCGGTCATCTGGGGTGAGAGAGACAAAACTGCAGGGATAACTGAGGAGTCAGGCTGGGATATATATACTTTAAGAGTATTTTTAGGCACCTAACTCCCACTGAAACCGAGCTTTAAGAGAATCCCAGCCAATTCCTGGGGATACTGGGATTCCCCTTGGGAGCTTAAGTGTCTGAAAATAGAGGATTTAGCAGAGTTTTCTTGCTTGGGTGTCTCTGTAGATACCCCCTGACAGTTATGCTTCATGATGCTCCTTGTTGCCTCCCTTTGAGTGACACCAGCCCCTGTCTGCATCCCCGTGGCAGGGCTGTGTGCTGGGACGTGGTCGGCTCTGCTTGGCCTCGTCCCACTCCTATGGCAAGGTGACAATTTCTATGAACATATTCGCCCTTCAAGCTGATGATTCACCAGAACAGTGACAGTGAATTGTTTTGTTTTTTAGCAGGCGCTCACGTGTCTCCTGGGGGATTGGCAGGATAATGTTTTGCCATTGATGCTGTCTTGGGCCAGTGGGTATATCGCTGCTCCCTCCTTGTGCAGTGCAACGCTTGGCACGGGGCTCTGCTGCACGCATGGATTTGTCTCTTGCTTCCTGTGGGTATTGTAAAGCATCTGCAGAAAGCAAGGGGCAAACTGAGCCCGACTTGGGAGAATGTCGATGGGAGAGATCTGGAGTTATAAGCTGACGTGGTTTTGAATAGTCTCGTATGTCTATTTACAACAACTAATGTATGTATTAAATATTGATAAGTGAACGTGCATAGTGTAATGTGTACTATGTGGCTGCACGCCCTTGCACAGTACAGTGGCTGTGATGCTGGTGGTACCTTTGCCAGCAGCAGGTGCATCTCATTCCAGCACTGGGGCTGTGCAAAGGCTTGCAGCAGTGGGCTGCCGGGAGCACAATCTCCTGTCCAACCTGCAGGCACAAGAGGTTGTGGCTCCTGCAGCACTGGCTGCTGTGCAATTTGTGTTGCTGCTGCTGTTGTTTAGCTTGGCAGAGATTGACATTGGTAGGATGAAAGTTATTGTGTTTCTGCTGTTTTGAATGTGTCTCTATATCCTTTCCCCTTAG
Seq C2 exon
ATGACTATGTTCACATTTCTAGCAAGCCCTGTGACCTCCATTGCACCACTGTGGATGGTCAGAGACAATTAATGGTTCAGGCTCGGGATGGAACATCCTGCAAATACACTGATTTCCGAGGGGTTTGCGTGTCTGGAAAATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955:ENSGALT00000004669:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(1.8=2.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAACGGAAGGAGCTTTCGA
R:
CTCACATTTTCCAGACACGCA
Band lengths:
240-1728
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]