GgaEX0005372 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr8:6391989-6393715:+
Coord C1 exon
chr8:6391989-6392064
Coord A exon
chr8:6392554-6392656
Coord C2 exon
chr8:6393570-6393715
Length
103 bp
Sequences
Splice sites
3' ss Seq
CACATTTATTCCCTCCATAGCCC
3' ss Score
8.33
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCTCCAGATGCCCCAGGGAACAAACAGCACCATGTGTGTTGGCCAAGCCAAGCACTACCAACTGTGCCAGCAGCAG
Seq A exon
CCCTGCCCAGCCAACACAGCAAGCTTCAAACAACAGCAGTGCTCCAGTTTCAATGCCAAAGCCTTTGGGAAGCGGTACTACCACTGGATGCCCCTCTATCCAG
Seq C2 exon
ATGACTACACCAGCATCTCCAACAAGCCGTGTGACCTCCAGTGCACCACGCGGAATGGAGAGAGGCAGCTGATGGCCCGAGCCCAGGATGGTACCTCCTGCAAGGACAGGACCTACCAAGGGGTCTGCATCAATGGGAAGTGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004032-'3-2,'3-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.041
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(45.5=100)
A:
PF0009014=TSP_1=PD(1.8=2.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGCCCCAGGGAACAAAC
R:
CTCGCACTTCCCATTGATGCA
Band lengths:
218-321
Functional annotations
There are 0 annotated functions for this event