MmuEX6099838 @ mm9
Exon Skipping
Gene
ENSMUSG00000036040 | Adamtsl2
Description
ADAMTS-like 2 [Source:MGI Symbol;Acc:MGI:1925044]
Coordinates
chr2:26938720-26940442:+
Coord C1 exon
chr2:26938720-26938795
Coord A exon
chr2:26939516-26939618
Coord C2 exon
chr2:26940297-26940442
Length
103 bp
Sequences
Splice sites
3' ss Seq
GGCCTGCCTTCTTCTTTCAGGAG
3' ss Score
10.94
5' ss Seq
CGGGTACCT
5' ss Score
4.35
Exon sequences
Seq C1 exon
GAGGAAGTCTGTTCCAGGCACAGGGAACAGGACCTGTGTGGGCACGTCCAAACGGTACCAGCTCTGCAGAGTGCAG
Seq A exon
GAGTGTCCACCGGATGGGAGGAGCTTCCGTGAAGAGCAGTGTGTCTCCTTCAACTCCCGTGTGTATGACGGCCGGGCGTACCAGTGGAAGCCCCTTTACCCGG
Seq C2 exon
ATGACTACGTGCACATCTCCAGTAAGCCATGCGACCTACACTGCAGCACCGTGGACGGCCAACGGCAGCTCACGGTGCCGGCCCGAGACGGCACTTCCTGCAAGCTCACCGACCTGAGAGGGGTTTGCGTGTCTGGAAAATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036040-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(45.5=100)
A:
PF0009014=TSP_1=PD(1.8=2.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTCTGTTCCAGGCACAGG
R:
CTCACATTTTCCAGACACGCA
Band lengths:
219-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: