GgaEX1006452 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr17:7647450-7649641:+
Coord C1 exon
chr17:7647450-7647525
Coord A exon
chr17:7647905-7648007
Coord C2 exon
chr17:7649496-7649641
Length
103 bp
Sequences
Splice sites
3' ss Seq
GTTAATGCATCCCATTGTAGGAG
3' ss Score
6.21
5' ss Seq
CTGGTAACA
5' ss Score
4.6
Exon sequences
Seq C1 exon
ACGAAAGTCGGTGAGTGGGCTGGCTAATAAAACTTGCACTGGAACATCCAAAAGATATCAGCTCTGCAAAGTACAA
Seq A exon
GAGTGCCCCGCAAACGGAAGGAGCTTTCGAGAGGAGCAGTGTTCATCCTTTAACTCCCATGTGTATAATGGAAGAACGTATCAATGGAAACCTTTATACCCTG
Seq C2 exon
ATGACTATGTTCACATTTCTAGCAAGCCCTGTGACCTCCATTGCACCACTGTGGATGGTCAGAGACAATTAATGGTTCAGGCTCGGGATGGAACATCCTGCAAATACACTGATTTCCGAGGGGTTTGCGTGTCTGGAAAATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955-'2-5,'2-2,3-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(45.5=100)
A:
PF0009014=TSP_1=PD(1.8=2.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGTCGGTGAGTGGGCTG
R:
CTCACATTTTCCAGACACGCA
Band lengths:
220-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]