DreEX6014347 @ danRer10
Exon Skipping
Gene
ENSDARG00000074033 | adamtsl2
Description
ADAMTS-like 2 [Source:ZFIN;Acc:ZDB-GENE-070705-558]
Coordinates
chr5:65238876-65241916:-
Coord C1 exon
chr5:65241841-65241916
Coord A exon
chr5:65239106-65239208
Coord C2 exon
chr5:65238876-65239021
Length
103 bp
Sequences
Splice sites
3' ss Seq
CGTATTTCTGTGAGAAACAGGAA
3' ss Score
-1.11
5' ss Seq
CTGGTATTA
5' ss Score
2.14
Exon sequences
Seq C1 exon
GAAGAAAACAACAACCGGTAAAGACAACATGACATGCACAGGCAATGCAAAAAAGTATCATCTCTGCAATGCAAAG
Seq A exon
GAATGTCCTTCTACAGGGAGGAGTTTCAGAGAAGAGCAGTGCTGGTCCTTCAACTCTCAGGTTTACAATGGAAAGAATTACCACTGGAAACCTCTCTATCCTG
Seq C2 exon
ACGACTACGTTCATATCTCCAGTAATCCGTGTGACCTACACTGCACCACCTCTGATGGTCAAAGACAGCTGATGGTTCCTGCACGTGATGGGACGTCCTGCAAGTACAGCAACTACAGAGGCGTGTGTGTCGACGGCAAATGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074033-'1-4,'1-3,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(45.5=100)
A:
PF0009014=TSP_1=PD(1.8=2.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAACAACAACCGGTAAAGACA
R:
TTCACATTTGCCGTCGACACA
Band lengths:
220-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]