MmuEX6099838 @ mm10
Exon Skipping
Gene
ENSMUSG00000036040 | Adamtsl2
Description
ADAMTS-like 2 [Source:MGI Symbol;Acc:MGI:1925044]
Coordinates
chr2:27083200-27084922:+
Coord C1 exon
chr2:27083200-27083275
Coord A exon
chr2:27083996-27084053
Coord C2 exon
chr2:27084777-27084922
Length
58 bp
Sequences
Splice sites
3' ss Seq
GGCCTGCCTTCTTCTTTCAGGAG
3' ss Score
10.94
5' ss Seq
CCCGTGTGT
5' ss Score
2.23
Exon sequences
Seq C1 exon
GAGGAAGTCTGTTCCAGGCACAGGGAACAGGACCTGTGTGGGCACGTCCAAACGGTACCAGCTCTGCAGAGTGCAG
Seq A exon
GAGTGTCCACCGGATGGGAGGAGCTTCCGTGAAGAGCAGTGTGTCTCCTTCAACTCCC
Seq C2 exon
ATGACTACGTGCACATCTCCAGTAAGCCATGCGACCTACACTGCAGCACCGTGGACGGCCAACGGCAGCTCACGGTGCCGGCCCGAGACGGCACTTCCTGCAAGCTCACCGACCTGAGAGGGGTTTGCGTGTCTGGAAAATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036040-'7-8,'7-7,8-8
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(45.5=100)
A:
PF0009014=TSP_1=PD(1.8=2.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAAACGGTACCAGCTCTG
R:
GTCGGTGAGCTTGCAGGAAG
Band lengths:
144-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types