DreEX0068157 @ danRer10
Exon Skipping
Gene
ENSDARG00000075487 | si:ch211-267e7.3
Description
si:ch211-267e7.3 [Source:ZFIN;Acc:ZDB-GENE-070912-265]
Coordinates
chr2:20928969-20929795:-
Coord C1 exon
chr2:20929720-20929795
Coord A exon
chr2:20929420-20929522
Coord C2 exon
chr2:20928969-20929114
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTGTCTGGATGTTTGCCTAGCCG
3' ss Score
3.12
5' ss Seq
CGGGTAAAA
5' ss Score
5.16
Exon sequences
Seq C1 exon
ACTGACGTCGACCCAAAACATCAACAGTTCTTTCTGCATTGGACCTTCAAAACAGTATCAGCTGTGCACAAATCAG
Seq A exon
CCGTGCCCAAACAGCAGAATCAGCTTCAAACAGCACCAGTGCTCTCAATTCAATGCCAAAGCCTTCAGCAGGAAGCACTATGAGTGGGTTCCACTTTATCCGG
Seq C2 exon
ATGATTACATCAACATCTCCAATAAGCCATGTGACCTCCAGTGCACTACAACCACAGGGGAGAGGCAACTACTGGTTCCTGCTCATGATGGGACGTTCTGCAGGGACGGCATTTACCAGGGGGTTTGCATTGAAGGCCAGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075487_MULTIEX1-3/9=2-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(45.5=100)
A:
PF0009014=TSP_1=PD(1.8=2.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGACGTCGACCCAAAACAT
R:
CTGACACTGGCCTTCAATGCA
Band lengths:
222-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]