HsaEX0002590 @ hg19
Exon Skipping
Gene
ENSG00000197859 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:14631]
Coordinates
chr9:136403471-136405865:+
Coord C1 exon
chr9:136403471-136403546
Coord A exon
chr9:136404893-136404995
Coord C2 exon
chr9:136405720-136405865
Length
103 bp
Sequences
Splice sites
3' ss Seq
CCTGTCCCTTCGCTTCCCAGGAG
3' ss Score
10.94
5' ss Seq
CGGGTACCT
5' ss Score
4.35
Exon sequences
Seq C1 exon
GAGGAAGTCCGTCCCGGGCCCCGGGAACAGGACCTGCACGGGCACGTCCAAGCGGTACCAGCTCTGCAGAGTGCAG
Seq A exon
GAGTGTCCGCCGGACGGGAGGAGCTTCCGCGAGGAGCAGTGCGTCTCCTTCAACTCCCACGTGTACAACGGGCGGACGCACCAGTGGAAGCCTCTGTACCCGG
Seq C2 exon
ATGACTATGTCCACATCTCCAGCAAACCGTGTGACCTGCACTGTACCACCGTGGACGGCCAGCGGCAGCTCATGGTCCCCGCCCGCGACGGCACATCCTGCAAGCTCACTGACCTGCGAGGGGTTTGCGTGTCTGGAAAATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197859_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(45.5=100)
A:
PF0009014=TSP_1=PD(1.8=2.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGAACAGGACCTGCA
R:
CTCACATTTTCCAGACACGCA
Band lengths:
202-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)