BtaEX6047350 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007492 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr11:104476319-104478250:+
Coord C1 exon
chr11:104476319-104476394
Coord A exon
chr11:104477519-104477621
Coord C2 exon
chr11:104478105-104478250
Length
103 bp
Sequences
Splice sites
3' ss Seq
TCCCTGCCTCTTGCTCCCAGGAG
3' ss Score
9.58
5' ss Seq
CGGGTACCT
5' ss Score
4.35
Exon sequences
Seq C1 exon
GAAGACGTCCGTCACAGGTGCCGGGAACCGGACCTGCACGGGCACGTCCAAGAGGTACCAGCTATGCAGAGTGCAG
Seq A exon
GAGTGTCCGCCGGACGGGAGGAGCTTCCGCGAGGAGCAGTGCATCTCCTTCAACTCCCGCGTGTACAACGGGCGCAGGCACCAGTGGAAGCCACTCTATCCGG
Seq C2 exon
ACGACTACGTGCACATCTCCAGCAAGCCATGTGACCTGCACTGCACCACCGTGGATGGCCAGCGGCAGCTCATGGTGCCCGCCCGCGACGGCACGTCCTGCAAGCTCGCCGACCTGCGCGGGGTCTGCGTGTCTGGAAAATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007492-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(45.5=100)
A:
PF0009014=TSP_1=PD(1.8=2.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACGTCCGTCACAGGTG
R:
CATTTTCCAGACACGCAGACC
Band lengths:
218-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]