RnoEX0006917 @ rn6
Exon Skipping
Gene
ENSRNOG00000027742 | Adamtsl2
Description
ADAMTS-like 2 [Source:RGD Symbol;Acc:1305459]
Coordinates
chr3:5627903-5629681:+
Coord C1 exon
chr3:5627903-5627978
Coord A exon
chr3:5628761-5628863
Coord C2 exon
chr3:5629536-5629681
Length
103 bp
Sequences
Splice sites
3' ss Seq
GCCCGCCTGCCTTCTTTCAGGAG
3' ss Score
10.75
5' ss Seq
CGGGTACCT
5' ss Score
4.35
Exon sequences
Seq C1 exon
GAGGAAGTCTGTTCCAGGTGCAGGGAACAGGACCTGTGTGGGCACATCCAAACGGTACCAGCTCTGCAGAGTGCAG
Seq A exon
GAGTGTCCACCGGATGGGAGGAGCTTCCGTGAAGAACAGTGTGTCTCCTTCAACTCCCGTGTGTATGACGGCCGGGCGTACCAGTGGAAGCCCCTTTACCCGG
Seq C2 exon
ATGACTACATGCACATCTCCAGTAAGCCGTGTGACCTACACTGCACCACTGTGGACGGCCAACGGCAGCTCATGGTGCCGGCCCGAGACGGCACCTCCTGCAAGCTCACCGACCTGAGAGGGGTTTGCGTGTCTGGAAAATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027742-'3-6,'3-5,4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(45.5=100)
A:
PF0009014=TSP_1=PD(1.8=2.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTCTGTTCCAGGTGCAGG
R:
CTCACATTTTCCAGACACGCA
Band lengths:
219-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]