GgaEX0005372 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NX02]
Coordinates
chr8:6071956-6075717:+
Coord C1 exon
chr8:6071956-6072031
Coord A exon
chr8:6072521-6072623
Coord C2 exon
chr8:6075637-6075717
Length
103 bp
Sequences
Splice sites
3' ss Seq
CACATTTATTCCCTCCATAGCCC
3' ss Score
8.33
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCTCCAGATGCCCCAGGGAACAAACAGCACCATGTGTGTTGGCCAAGCCAAGCACTACCAACTGTGCCAGCAGCAG
Seq A exon
CCCTGCCCAGCCAACACAGCAAGCTTCAAACAACAGCAGTGCTCCAGTTTCAATGCCAAAGCCTTTGGGAAGCGGTACTACCACTGGATGCCCCTCTATCCAG
Seq C2 exon
GTTACGTGTTCATCACCAGCATCCCTGCCGGTGCCATGGACATCCTCATCATGGAACGCAGGAAGACAGAAAACATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004032_MULTIEX1-1/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(45.5=100)
A:
PF0009014=TSP_1=PD(1.8=2.9)
C2:
PF059869=ADAM_spacer1=FE(22.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGATGCCCCAGGGAA
R:
AGGATGTTTTCTGTCTTCCTGCG
Band lengths:
154-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]