GgaEX6043791 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr8:6390605-6392656:+
Coord C1 exon
chr8:6390605-6390693
Coord A exon
chr8:6391989-6392064
Coord C2 exon
chr8:6392554-6392656
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTTCACATTCTGCTTTGCAGGCT
3' ss Score
8.9
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
TGGTGGGGAGAGTGGAGCTCCTGGTCCACCTGCTCTCGATCCTGCGGGGGAGGCGTGATGTCCCGGGAGCGGCACTGCCTGCGGCAGCG
Seq A exon
GCTCCAGATGCCCCAGGGAACAAACAGCACCATGTGTGTTGGCCAAGCCAAGCACTACCAACTGTGCCAGCAGCAG
Seq C2 exon
CCCTGCCCAGCCAACACAGCAAGCTTCAAACAACAGCAGTGCTCCAGTTTCAATGCCAAAGCCTTTGGGAAGCGGTACTACCACTGGATGCCCCTCTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004032-'1-1,'1-0,3-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(49.1=90.0)
A:
PF0009014=TSP_1=FE(45.5=100)
C2:
PF0009014=TSP_1=PD(1.8=2.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCTGCTCTCGATCCTG
R:
TGGATAGAGGGGCATCCAGTG
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]