GgaEX6043791 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NX02]
Coordinates
chr8:6070465-6072623:+
Coord C1 exon
chr8:6070465-6070660
Coord A exon
chr8:6071956-6072031
Coord C2 exon
chr8:6072521-6072623
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTTCACATTCTGCTTTGCAGGCT
3' ss Score
8.9
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTCTGGAGATAGGCCGCCGGGTTCCCCAGCTAACCGTCCTCTGTTTCTGTCAGGACAGTAGTGAGGCAGCAGGTGGAGATGGCCCCTGGGATGAAGAAGTTACCACGTGGTGGGGAGAGTGGAGCTCCTGGTCCACCTGCTCTCGATCCTGCGGGGGAGGCGTGATGTCCCGGGAGCGGCACTGCCTGCGGCAGCG
Seq A exon
GCTCCAGATGCCCCAGGGAACAAACAGCACCATGTGTGTTGGCCAAGCCAAGCACTACCAACTGTGCCAGCAGCAG
Seq C2 exon
CCCTGCCCAGCCAACACAGCAAGCTTCAAACAACAGCAGTGCTCCAGTTTCAATGCCAAAGCCTTTGGGAAGCGGTACTACCACTGGATGCCCCTCTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004032-'1-4,'1-1,4-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(49.1=40.9)
A:
PF0009014=TSP_1=FE(45.5=100)
C2:
PF0009014=TSP_1=PD(1.8=2.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGACAGTAGTGAGGCAGC
R:
TTGAAGCTTGCTGTGTTGGCT
Band lengths:
176-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]