DreEX0068156 @ danRer10
Exon Skipping
Gene
ENSDARG00000075487 | si:ch211-267e7.3
Description
si:ch211-267e7.3 [Source:ZFIN;Acc:ZDB-GENE-070912-265]
Coordinates
chr2:20928969-20936220:-
Coord C1 exon
chr2:20936078-20936220
Coord A exon
chr2:20929720-20929795
Coord C2 exon
chr2:20928969-20929114
Length
76 bp
Sequences
Splice sites
3' ss Seq
CATCAATGGCTTGTTTTCAGACT
3' ss Score
5.53
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
GACAGCAGTGAGGGGAGGGAGGATTTGCAGAGGCATCCAGACGAGGTAGCGCAGTGGTGGGGTGAATGGAGCAGCTGGTCCACCTGTTCCCGTACCTGTGGAGGAGGAGTGCGCTCTCAGGAACGTCACTGTCTGCAACAGAG
Seq A exon
ACTGACGTCGACCCAAAACATCAACAGTTCTTTCTGCATTGGACCTTCAAAACAGTATCAGCTGTGCACAAATCAG
Seq C2 exon
ATGATTACATCAACATCTCCAATAAGCCATGTGACCTCCAGTGCACTACAACCACAGGGGAGAGGCAACTACTGGTTCCTGCTCATGATGGGACGTTCTGCAGGGACGGCATTTACCAGGGGGTTTGCATTGAAGGCCAGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075487_MULTIEX1-2/9=1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(49.1=56.2)
A:
PF0009014=TSP_1=FE(45.5=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGCATCCAGACGAGGTA
R:
GTGGTTGTAGTGCACTGGAGG
Band lengths:
171-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]