GgaINT0036815 @ galGal3
Intron Retention
Description
NA
Coordinates
chr8:6390605-6392064:+
Coord C1 exon
chr8:6390605-6390693
Coord A exon
chr8:6390694-6391988
Coord C2 exon
chr8:6391989-6392064
Length
1295 bp
Sequences
Splice sites
5' ss Seq
GCGGTGGGT
5' ss Score
6.6
3' ss Seq
TTTCACATTCTGCTTTGCAGGCT
3' ss Score
8.9
Exon sequences
Seq C1 exon
TGGTGGGGAGAGTGGAGCTCCTGGTCCACCTGCTCTCGATCCTGCGGGGGAGGCGTGATGTCCCGGGAGCGGCACTGCCTGCGGCAGCG
Seq A exon
GTGGGTCCCAGCGTGCACCCTCCGTGGTGCCCCAACCTCCATTGGTCCCTGACAGCCCCATTTGGCCCCTGCAGCTACTGCAGTCCTGTAAGTGGTCACACGGGGTTTGTGGGGACCCAGCTGTTCCCTCCGGATCACCTCACCACGCCACCCAGCCCTCCTCACCAGGCACCTCGCCAGCCTGAGCCGCTAACAAGAGCCAGCATCGTACTGCACAGCACACCACAGGGGCTGCTCAGCCTCTTTCCCTTCTGCGTGACTGCACTCCTGAGGGCAGGGAGCTCAGACAAGGGCCCCCCCACCTGCTCTGCCTCCTCCAGAAGAGAATTTCTTTTATGTGGGCTGGTTGGCAGCGTAGTAAGGGCGCAGATGTGGTGACATGCCGTCCGTCTGGACACCGCCTCCCCACTAACGAGGCTTGCCAATGTCTCTGCCTCTGCTTGACATCAAACCCAGCCAGAAGGCTCCTGCAGCTTTCAGCAGGGCAGCTTAAGTGTGAGCCAGCCGTGCCCCGTGAAACAATTCTTGCTGGAGTCTGCGGGCTGCCCCTGCTTCAGCTGAAAGAGGTGGCAATTTGGAAGCCCTGTGATGTGAATTTAGGCTCTACCACCATTGTGTAAAGCGTTGCTCTGCAGGAGTAGCTGCGGCACATCTGAGCAGCCCAGCTTGAATGTGGCTCTTCATTACACAGTGAAGCTCCCATCTGTAACCTTGACCTTTCTTCCTGCATCTGCCCAGCTTTCAAGATTTGTTTTAGCTTTTGCATTAGTCAAGGACTTCAGCATCCCTTGGACAAATGCTGCTGGCCGCAGCTAAAGCATCACTTGCTGAGAAATCCCCGTGGTTTCTGTTCATCACCAAACCTCTCCTGCTCATCTTGAAAGGTGCTCAGTCCCCATGAGAGGCGCCACCTCTCTGCATGCCGCTCAGTGAATTCTGAAACCAACCCCCCAGCCCACTTCCAAATCGTAGGTGTTGCCATGGCAGTGGTGGATCATCAGGCCCTGTTGCCATTTTGTCACACCAGCCCTTTTGCAGCTCAGGGACGTCTGGGCACAGCCATGGAAATACTTCAGTTGTTTCCCATCCACTCAATCTGCCCTATAATGAGAGTAGCCTAAAACCATGCTTCCAAGCTAGAAGCACTGCAAATGCCTTTCAGAGGAGATATTGACTAGTGTAGATCTTGAAAACCTTACTGTGATAAAATCCCACCCTGACTCCTCTATTATCCTTGATTTCTTAGTGCTTTGCAGGCCTCTAGCTTATTTCTGCTTTCACATTCTGCTTTGCAG
Seq C2 exon
GCTCCAGATGCCCCAGGGAACAAACAGCACCATGTGTGTTGGCCAAGCCAAGCACTACCAACTGTGCCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004032:ENSGALT00000006421:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(49.1=90.0)
A:
NA
C2:
PF0009014=TSP_1=FE(45.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]