HsaINT0004311 @ hg19
Intron Retention
Gene
ENSG00000197859 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:14631]
Coordinates
chr9:136402527-136403546:+
Coord C1 exon
chr9:136402527-136402669
Coord A exon
chr9:136402670-136403470
Coord C2 exon
chr9:136403471-136403546
Length
801 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGA
5' ss Score
5.51
3' ss Seq
AGCCTGCATCTTTCTGCCAGGAG
3' ss Score
6.07
Exon sequences
Seq C1 exon
GACAACAGCCCAACATCCAATAGCCTGGAGGGGGGCACCGACGCCACGGCCTTCTGGTGGGGGGAGTGGACCAAGTGGACGGCGTGTTCCCGCAGTTGCGGGGGTGGGGTGACATCCCAGGAGCGGCACTGCCTGCAGCAGAG
Seq A exon
GTGCGAGGTTGGGCACGTGGCCCTGAGGGGATGGCATGAGGGCAGGGTAGCGGGCAGGAGAGGGCGGTTGGCTCTTCAGCCTGGTGGCTTCTCCCCCTGGGAGGGCTCTCGGGTTGGGGGCAGCACAGGCTGAGTCCCCCCATCAGCCTCTGCTGGACGCGGCTATGGATGGGCCCCAGCACTGGTGCTCTGGGGTCCTTCATGCTTCAGGGCACCAGGAAAGCCCTTTCACGAGAGGGCAGGAGCCATTTCTAGAGGTCTGTCCTGGAGGCGGAGAACCACCCTGACTTCTCTTCTGAAGACCTGAGTGAGGGTCTTTAGAATATGCCAGGGAGCCCCGGGAGAAGCAGAGGACTGGCAGGAAAGCCTCCGCTGCCAGATGGACCTGGCTCCTATCTAGCCTGTGCTACTCCCTCACTGTATGACCTTGGGCAAGTCACTTAACCTCTCTGAGCATCAGTTTTCTCATCCATGGCATGGAGAGCGTGCTGGTCTCACCTCATGCTTCTGAGAACACACATGTGTGTGCACCTGGGCACAGGCCTGGCACACAACCCATGTGGTTGTTTCAATTCTGTGTACTGAGCCCCTGTGCTATGTGCTGCTGATGTAGAAGTGAATCAAATCTCATTCCCCCTTGGCTCTGGTGTGTGTACGGGGTGGGAGTTGAGTAGGGAGGAAGGAGCCCTCTGGGTCACGGGTATCGGGAGATTCTGGATCCCAGTGGCCGTGGGGCCAGCCCAGGCGACATTCCTGAAACTCCTCTGCAGCCCTCACTCCGAGCCTGCATCTTTCTGCCAG
Seq C2 exon
GAGGAAGTCCGTCCCGGGCCCCGGGAACAGGACCTGCACGGGCACGTCCAAGCGGTACCAGCTCTGCAGAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197859-ADAMTSL2:NM_001145320:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.154
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(49.1=56.2)
A:
NA
C2:
PF0009014=TSP_1=FE(45.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCCCAACATCCAATAGCC
R:
GCACTCTGCAGAGCTGGTAC
Band lengths:
214-1015
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)