GgaINT0126460 @ galGal4
Intron Retention
Gene
ENSGALG00000002955 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr17:6973642-6974431:+
Coord C1 exon
chr17:6973642-6973784
Coord A exon
chr17:6973785-6974355
Coord C2 exon
chr17:6974356-6974431
Length
571 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
ACCATTATTTCTTTATTCAGACG
3' ss Score
6.87
Exon sequences
Seq C1 exon
GACCTGCCTCAGACCTCCAACAGCCTGGAGGAGGGTGCAGATGTCACTGCATACTGGTGGGGTGAGTGGACCAAGTGGACGGCATGCACGAGGAGCTGTGGTGGAGGTGTGAAGTCCCAGGAGAGGCACTGCCTGCGGCAGAG
Seq A exon
GTATGGGGGTGGGAAGACCTCAGTGTGTGCACATGGGAGTGGGTCTGGTCTGGGTCATTGCTTGGTGGGTGAGTGCAGGTAGAGAGGGGTCAGCTGGCAAAGCCTATGTGAGCAGAAGGTGAGCGTGGTGTTGGGAGGGGCTGCGTCCTCCCCATTAGGGAAAGAGTCATTAAGATTGGGAAGGACCACAAAGATTCCCCACCTCAACCCACCCCCACCGTGCCCACTGGCTGTGTCCCTCAGTGCCACATCTCCATATTTCTGGAGCCCTGTAGGGATGTTGACTCCATCACTCTTTGAGCAGTGATGCAATGGCACAGCTGCCCTTTCTGAGCAGCAGTTCTTCCTGCTATCCAACCTGAACCTCCCCTGGCACTGTGTGGGGCCATCACCCTTTGCCCTGTTGCTGATATCTGGGAGCTGAGATGCTCTGTGCTGACCCCAAGGTTTCTCCTTTAGGTGTGGCTTTGCTTTGTGGATGCAGGTCTTGAAGAAGCAGGGAACAATGACTCCTTTAGGGGAGAAAATGAAGTGTTTCTGACCCCTGTCTAACCATTATTTCTTTATTCAG
Seq C2 exon
ACGAAAGTCGGTGAGTGGGCTGGCTAATAAAACTTGCACTGGAACATCCAAAAGATATCAGCTCTGCAGAGTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955:ENSGALT00000004669:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(49.1=56.2)
A:
NA
C2:
PF0009014=TSP_1=FE(45.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGCCTCAGACCTCCAA
R:
ACTCTGCAGAGCTGATATCTTTTGG
Band lengths:
215-786
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]