BtaINT0014348 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007492 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr11:104475276-104476394:+
Coord C1 exon
chr11:104475276-104475415
Coord A exon
chr11:104475416-104476318
Coord C2 exon
chr11:104476319-104476394
Length
903 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCTG
5' ss Score
2.64
3' ss Seq
AGCCCGGGTCCTCCCTCCAGGAA
3' ss Score
9.33
Exon sequences
Seq C1 exon
AACAGCCCAACGTCCAACAACCTGGAGGTGGGCCCCAACACCACCGCCTACTGGTGGGGAGAGTGGACCAAATGGACGGCGTGTTCCCGCAGCTGCGGGGCTGGGGTGACGTCCCAGGAGCGGCACTGCCTACAGCAGAG
Seq A exon
GTGCTGGTGTGAAGCGGGGCCCCGTGGGGCTGGCCGCCCGGACTGCAGGGGGCGGGGAGGCGGGGCCCGTGGGGTGGCCGCCCGGACTGGAGCGGGGTGGGGAGGCGGGCAGCAGCTGCTGGGTGGGGGGCCCGGGTTGAACGTGGCCTTCAGGTTGAGGCTGCACAGGCCAGCTGAGCCGGTCAGTCTTTTCACTGGCCTCCCTTGGGGACACGGCTTCTGTCGGGTCCCAGGCAAGAGTGTCCTGCAGTTCATCCCTCTCTGGGGCACTGGGGAAAGAGGACCTGCCTAGGGCTCTTTCAGGAGTGGTCAGGCCCACCCTGGCCTTCTCTCTCCTGAAGACCCGAGGTGAATAAACACCGGGTAAGCCTACGGTGCGGTGGTTACTGCTGGCCAGACCTGTGTTCACATCTTGCGTCTGCAACTTCCTAGCTGTGTGACCTTGGGGAAGTCACTTAACCTCTCTGAGTATCAGTTTCCTCTTTGTGGAGCGGAGATTATGCTCGCGCCCACCTGACGTTTCTGAGAATGCGAGACCGTGTGTGTGTGTGCGCGTGCGCGCGCTCTTTAGCAGAGGGCCAGGCCCATGGTGAACGCTGTTCTGCCATCACTAATTCTGTGGCCTAAGACTGTGCACTGTGTGCTGAGGACTCAGATGTGAACGGGACCTTGCCCCTCCCCCAGGAAGAGGCTGAGACGCACCCTGAAACTATGGGGGTGCCTGTGACAGGAGCAGGCTTTGCTGGAGCAGCGGGGATGGAGTGGGGCAGAAGGAGGCCTCGGTCAGAGGAGCCCGCAGAGGCTCGGGGCTGGGGGGTGCGGTCCAGGGGAGGGCTGGGAGCAGGGTCAGGATGGCAGCTGGCCACTCCTGACCTGAGCTCACAGCCCGGGTCCTCCCTCCAG
Seq C2 exon
GAAGACGTCCGTCACAGGTGCCGGGAACCGGACCTGCACGGGCACGTCCAAGAGGTACCAGCTATGCAGAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007492:ENSBTAT00000009855:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.191 A=NA C2=0.115
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(49.1=57.4)
A:
NA
C2:
PF0009014=TSP_1=FE(45.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCCCAACGTCCAACAAC
R:
GCACTCTGCATAGCTGGTACC
Band lengths:
214-1117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development