RnoINT0013631 @ rn6
Intron Retention
Gene
ENSRNOG00000027742 | Adamtsl2
Description
ADAMTS-like 2 [Source:RGD Symbol;Acc:1305459]
Coordinates
chr3:5627099-5627978:+
Coord C1 exon
chr3:5627099-5627241
Coord A exon
chr3:5627242-5627902
Coord C2 exon
chr3:5627903-5627978
Length
661 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GTACCACATTTTCCCGCCAGGAG
3' ss Score
7.89
Exon sequences
Seq C1 exon
GACAATAGCCCCACATCCAACAGCCTAGAGGGAGGTGCTGATGCCACTGCCTACTGGTGGGGAGAGTGGACCAAGTGGACTGCGTGTTCCCGCAGCTGTGGGGGCGGGGTGACATCCCAGGAGCGCCACTGCCTGCAACAGAG
Seq A exon
GTGAGTTCACCAGAAACCTGCAAGGGTGGGTGGGGAGGGCTAGCCTGGCCAGCGGCCTGGTGGCTCTTCTTCTGGGCTCACATTTGGTGTGTGCAGGCTTCTCTATCCATGGGCATAGAGCTTCTGACAAATCCTTAACATGGTATTCTGGGGTGCTGGAGAGGAGTGTCAGAAAGCAAGGTCTGTTTTTAGGGCTTTGCCAACAGGGAGCAAGACCCCTTGTCTTCTGAAGCATGAGCTACAGAAACAGGGAGGTGCTCAGGGCAAAGGGCTGGGAGCCTTTGCTCTCAGAGGGACCTGGGTTTGAGTCTTCGTTTTGCTACTTCTAAGCTGTGTGACCTTGGACAGGGCACTTAACCTCTCTGAGCACCAGTTTCCTCATCTGCGGCTTCATATGCGGAGCATGATGAAGCCAGCTCCTGTTTCTGGGCACACATGACACGACATGTGTTTGCATGTTCAGCACAAGCCTCAGCAAGCATGGGTGTCACACATGGGTTCTGCACAGTACAATTCTGTTGCGGGTGCTGGGAAGACAGAGAGGAAGCAGATGTCATCCTATGGAGACACAGAGGCTCCTGGAAGCTAGAACATGGCAGACAGGTGTCAGGGTCCGTAGCTGCCGACCCAGCCCTAGCTCAGTACCACATTTTCCCGCCAG
Seq C2 exon
GAGGAAGTCTGTTCCAGGTGCAGGGAACAGGACCTGTGTGGGCACATCCAAACGGTACCAGCTCTGCAGAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027742:ENSRNOT00000036995:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=NA C2=0.115
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(49.1=56.2)
A:
NA
C2:
PF0009014=TSP_1=FE(45.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAGCCCCACATCCAACAGC
R:
GCACTCTGCAGAGCTGGTAC
Band lengths:
214-875
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]