GgaINT0036815 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NX02]
Coordinates
chr8:6070465-6072031:+
Coord C1 exon
chr8:6070465-6070660
Coord A exon
chr8:6070661-6071955
Coord C2 exon
chr8:6071956-6072031
Length
1295 bp
Sequences
Splice sites
5' ss Seq
GCGGTGGGT
5' ss Score
6.6
3' ss Seq
TTTCACATTCTGCTTTGCAGGCT
3' ss Score
8.9
Exon sequences
Seq C1 exon
CTCTGGAGATAGGCCGCCGGGTTCCCCAGCTAACCGTCCTCTGTTTCTGTCAGGACAGTAGTGAGGCAGCAGGTGGAGATGGCCCCTGGGATGAAGAAGTTACCACGTGGTGGGGAGAGTGGAGCTCCTGGTCCACCTGCTCTCGATCCTGCGGGGGAGGCGTGATGTCCCGGGAGCGGCACTGCCTGCGGCAGCG
Seq A exon
GTGGGTCCCAGCGTGCACCCTCCGTGGTGCCCCAACCTCCATTGGTCCCTGACAGCCCCATTTGGCCCCTGCAGCTACTGCAGTCCTGTAAGTGGTCACACGGGGTTTGTGGGGACCCAGCTGTTCCCTCCGGATCACCTCACCACGCCACCCAGCCCTCCTCACCAGGCACCTCGCCAGCCTGAGCCGCTAACAAGAGCCAGCATCGTACTGCACAGCACACCACAGGGGCTGCTCAGCCTCTTTCCCTTCTGCGTGACTGCACTCCTGAGGGCAGGGAGCTCAGACAAGGGCCCCCCCACCTGCTCTGCCTCCTCCAGAAGAGAATTTCTTTTATGTGGGCTGGTTGGCAGCGTAGTAAGGGCGCAGATGTGGTGACATGCCGTCCGTCTGGACACCGCCTCCCCACTAACGAGGCTTGCCAATGTCTCTGCCTCTGCTTGACATCAAACCCAGCCAGAAGGCTCCTGCAGCTTTCAGCAGGGCAGCTTAAGTGTGAGCCAGCCGTGCCCCGTGAAACAATTCTTGCTGGAGTCTGCGGGCTGCCCCTGCTTCAGCTGAAAGAGGTGGCAATTTGGAAGCCCTGTGATGTGAATTTAGGCTCTACCACCATTGTGTAAAGCGTTGCTCTGCAGGAGTAGCTGCGGCACATCTGAGCAGCCCAGCTTGAATGTGGCTCTTCATTACACAGTGAAGCTCCCATCTGTAACCTTGACCTTTCTTCCTGCATCTGCCCAGCTTTCAAGATTTGTTTTAGCTTTTGCATTAGTCAAGGACTTCAGCATCCCTTGGACAAATGCTGCTGGCCGCAGCTAAAGCATCACTTGCTGAGAAATCCCCGTGGTTTCTGTTCATCACCAAACCTCTCCTGCTCATCTTGAAAGGTGCTCAGTCCCCATGAGAGGCGCCACCTCTCTGCATGCCGCTCAGTGAATTCTGAAACCAACCCCCCAGCCCACTTCCAAATCGTAGGTGTTGCCATGGCAGTGGTGGATCATCAGGCCCTGTTGCCATTTTGTCACACCAGCCCTTTTGCAGCTCAGGGACGTCTGGGCACAGCCATGGAAATACTTCAGTTGTTTCCCATCCACTCAATCTGCCCTATAATGAGAGTAGCCTAAAACCATGCTTCCAAGCTAGAAGCACTGCAAATGCCTTTCAGAGGAGATATTGACTAGTGTAGATCTTGAAAACCTTACTGTGATAAAATCCCACCCTGACTCCTCTATTATCCTTGATTTCTTAGTGCTTTGCAGGCCTCTAGCTTATTTCTGCTTTCACATTCTGCTTTGCAG
Seq C2 exon
GCTCCAGATGCCCCAGGGAACAAACAGCACCATGTGTGTTGGCCAAGCCAAGCACTACCAACTGTGCCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004032:ENSGALT00000006421:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(49.1=40.9)
A:
NA
C2:
PF0009014=TSP_1=FE(45.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGAGATAGGCCGCCG
R:
TGGCACAGTTGGTAGTGCTTG
Band lengths:
265-1560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]