DreEX0068158 @ danRer10
Exon Skipping
Gene
ENSDARG00000075487 | si:ch211-267e7.3
Description
si:ch211-267e7.3 [Source:ZFIN;Acc:ZDB-GENE-070912-265]
Coordinates
chr2:20916167-20929522:-
Coord C1 exon
chr2:20929420-20929522
Coord A exon
chr2:20928969-20929114
Coord C2 exon
chr2:20916167-20916270
Length
146 bp
Sequences
Splice sites
3' ss Seq
TGATGTCACCTCCTGTTCAGATG
3' ss Score
6.95
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
CCGTGCCCAAACAGCAGAATCAGCTTCAAACAGCACCAGTGCTCTCAATTCAATGCCAAAGCCTTCAGCAGGAAGCACTATGAGTGGGTTCCACTTTATCCGG
Seq A exon
ATGATTACATCAACATCTCCAATAAGCCATGTGACCTCCAGTGCACTACAACCACAGGGGAGAGGCAACTACTGGTTCCTGCTCATGATGGGACGTTCTGCAGGGACGGCATTTACCAGGGGGTTTGCATTGAAGGCCAGTGTCAG
Seq C2 exon
TAATGAGTTTGAGGTAGAATCGCTGGATCATGACGTCAGCATGTCGGACATGTATAGATGGAAGGTTTCTGCTTATGCACCTTGCAGCTCAACATGTACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075487_MULTIEX1-4/9=3-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.222
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(1.8=2.9)
A:
NO
C2:
PF0009014=TSP_1=PU(25.9=38.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCCCAAACAGCAGAATCA
R:
TGTACATGTTGAGCTGCAAGGT
Band lengths:
202-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]