GgaINT0036819 @ galGal3
Intron Retention
Description
NA
Coordinates
chr8:6394260-6395750:+
Coord C1 exon
chr8:6394260-6394383
Coord A exon
chr8:6394384-6395669
Coord C2 exon
chr8:6395670-6395750
Length
1286 bp
Sequences
Splice sites
5' ss Seq
TAGGTACTC
5' ss Score
4.68
3' ss Seq
CTCCTGTTCCTGCTCCTCAGGTT
3' ss Score
10.18
Exon sequences
Seq C1 exon
CCAGTGGGGTGCGATGGGAGCCTGTATTCGGCCCGGACGATGGACAGATGCAGGGTGTGTGGAGGGGACGGCAGCACTTGTCACCGTGTCTCAGGCAGCTTCCGAAAGGCAGTCTCACAGATAG
Seq A exon
GTACTCCCTGCTACCGCAGTCCAGAGACTTCACCTGCTACTTCTTACCACCAAGTGGCACGAAGGGTGGCTGGCTTGAGTGAGGGTAGGAGTTTCCCAGCTGCTTGGTGGAAAAAGCTGAGGAGTGCCAACCTCTGCTTAAATACCGACATGTTATCCTTTTGGATTAATCGGAGGAGATGGGGTGTGATGTGCTGTAAATTAGGCCAGCGAGGTTTTCTTTCACGTCTTCGCCGCAGGAGGCAGCTGGGGATCTCTTTGTTCCTATTGATTTTGGCATCTCGCGCACCTCAGATGATGTGGAGAGGTCAATGAATCTTCTTTTATTCGTGCTAGGTGTTCACCGGAAGGTTAGGCTCCTCTGATGAGGGTCACAGCATTTGTTTCAGCCTGCACTTCTCCTCCAGCTTTCCCCAGTCCTGTGGCTGATGCAGCTGAGGGACAGTCCCTCTGAAACTGGGCTGAGATTAATGGTTCATCTCTTGCAACCTCATGGCCCGTTCCTCCACCAAGAGGGAACAGACCGTGGTATACTCATTAGTAATTAATTAACTGTGGTTTGAGGATGTTTTGGAACATCGTTTTACGCTGCTGTTGTTCCACCAGCCCACCTCATTCTCCACAGACGCTAGACCAGAGAAGTGTTCTGGCTCCTTTCCAGGCTGTGGTAATGCTGCTGACCTCTCTGGAAGCACACAGACGGTCTTGGCCTTCCATTCCAGGCCTCATAAAATCTTACAGGATGGGAAAAAAAAAAACAAAAAAACAACCAACAGACTTTCTAACGGGAAAGACAAGCTGGCAAACCCCCACAGCGTTAAGAGCCTTTTACTTCCCATCCATTTAAAGCTCAATCTTTATGCTTCTCTTGAGACAAGTGCTGTTGAGTCGGGAGCTGTGGGGACCGACAGGCTTCTCCCTGCACCCTCCAGCACCAGTGCTGATCAATAGTAAGCTTTTTATGTGCTCCTGCGAGGAAAAGCCTGACAGCACATTCATTCACGCACCTGCAGCCACACTGTTAAGCCCACGCCATTCCTTTCTGACTTCAAACCCAGCAGTGGTCAGACTGAGCCTTAGGGACCTGCAGTGGTCATTCGTAAAGGGATTTCAGAGGGGAGCTGGGATTAGAGCTCACAGCTTGGCGCAACGTGTTCGTGTCCTTAACATCCTGCTAGGGGTAGCGCTGCCCTCCTACACGCACACCCATCCCACGAGATGCTTTGCCTACGAGCACTCTTCTGTTCCATCCTTGGAGTTTCTTCACCTCCTGTTCCTGCTCCTCAG
Seq C2 exon
GTTACGTGTTCATCACCAGCATCCCTGCCGGTGCCATGGACATCCTCATCATGGAACGCAGGAAGACAGAAAACATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004032:ENSGALT00000006421:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(11.8=33.3)
A:
NA
C2:
PF059869=ADAM_spacer1=FE(22.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCGATGGGAGCCTGTATT
R:
CCAGGATGTTTTCTGTCTTCCTG
Band lengths:
198-1484
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]