GgaALTD0003827-1/3 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000009545 | F1P3D8_CHICK
Description
NA
Coordinates
chr7:19345574-19346488:+
Coord C1 exon
chr7:19345574-19345640
Coord A exon
NA
Coord C2 exon
chr7:19346373-19346488
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTCC
5' ss Score
0.85
3' ss Seq
TTCTGTATTTCCCTTTGTAGGTT
3' ss Score
11.53
Exon sequences
Seq C1 exon
CGTTCCAGAGATGTCGTGAGAGCCCTGTCTGGTGATACTGCTGCTTCCTCATCTCGACTAAAAACAG
Seq A exon
NA
Seq C2 exon
GTTGATTTCCTTTCAAGAATTTTTGGCATTTGAATCTGTTTTGTGTACTCCAGATGCAATATTCATTGTTGCTTTTCAGTTATTTGACAAGAGTGGCAATGGAGAAGTAACATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009545-5-4,6-4,7-4-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138331=EF-hand_8=PD(19.6=25.0),PF134991=EF-hand_7=PU(24.3=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAGATGTCGTGAGAGCC
R:
TGCATCTGGAGTACACAAAACAGA
Band lengths:
122-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]