GgaEX0014099 @ galGal3
Exon Skipping
Gene
ENSGALG00000009545 | F1P3D8_CHICK
Description
NA
Coordinates
chr7:19341556-19346488:+
Coord C1 exon
chr7:19341556-19341698
Coord A exon
chr7:19345574-19345640
Coord C2 exon
chr7:19346373-19346488
Length
67 bp
Sequences
Splice sites
3' ss Seq
GGACTTTGGTTTGTATGCAGCGT
3' ss Score
4.77
5' ss Seq
CAGGTCTCC
5' ss Score
0.85
Exon sequences
Seq C1 exon
TATGCCAGTGTTGAGAAAGATGGAGAGCATTACATGACCCCAGAAGATTTTGTGCAGAAATACCTAGGACTTTATACAGATCCACGTTACAATCCTAAAACAGTACAGCTGTTGGCTGGAGTGGCAGATCAAACTAAAGATGG
Seq A exon
CGTTCCAGAGATGTCGTGAGAGCCCTGTCTGGTGATACTGCTGCTTCCTCATCTCGACTAAAAACAG
Seq C2 exon
GTTGATTTCCTTTCAAGAATTTTTGGCATTTGAATCTGTTTTGTGTACTCCAGATGCAATATTCATTGTTGCTTTTCAGTTATTTGACAAGAGTGGCAATGGAGAAGTAACATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009545-'2-4,'2-3,5-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.115 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(78.4=83.3)
A:
NO
C2:
PF138331=EF-hand_8=PD(19.6=25.0),PF134991=EF-hand_7=PU(24.3=62.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAGCATTACATGACCCCA
R:
TGCATCTGGAGTACACAAAACAGA
Band lengths:
181-248
Functional annotations
There are 0 annotated functions for this event