GgaALTD0003827-3/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000009545 | SLC25A12
Description
solute carrier family 25 (aspartate/glutamate carrier), member 12 [Source:HGNC Symbol;Acc:HGNC:10982]
Coordinates
chr7:17423050-17423964:+
Coord C1 exon
chr7:17423050-17423116
Coord A exon
chr7:17423117-17423153
Coord C2 exon
chr7:17423849-17423964
Length
37 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAAT
5' ss Score
3.54
3' ss Seq
TTCTGTATTTCCCTTTGTAGGTT
3' ss Score
11.53
Exon sequences
Seq C1 exon
CGTTCCAGAGATGTCGTGAGAGCCCTGTCTGGTGATACTGCTGCTTCCTCATCTCGACTAAAAACAG
Seq A exon
GTCTCCTGATGCATCCTGAGTTGCATTTTTCTGTATG
Seq C2 exon
GTTGATTTCCTTTCAAGAATTTTTGGCATTTGAATCTGTTTTGTGTACTCCAGATGCAATATTCATTGTTGCTTTTCAGTTATTTGACAAGAGTGGCAATGGAGAAGTAACATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009545-10-7,11-7,12-7-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138331=EF-hand_8=PD(19.6=25.0),PF0003627=EF-hand_1=PU(65.5=47.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSGALT00000015535fB1633
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAGATGTCGTGAGAGCC
R:
TGCATCTGGAGTACACAAAACAGA
Band lengths:
122-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]