GgaEX0014100 @ galGal4
Exon Skipping
Gene
ENSGALG00000009545 | SLC25A12
Description
solute carrier family 25 (aspartate/glutamate carrier), member 12 [Source:HGNC Symbol;Acc:HGNC:10982]
Coordinates
chr7:17419032-17432591:+
Coord C1 exon
chr7:17419032-17419174
Coord A exon
chr7:17423849-17423964
Coord C2 exon
chr7:17432452-17432591
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTCTGTATTTCCCTTTGTAGGTT
3' ss Score
11.53
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
TATGCCAGTGTTGAGAAAGATGGAGAGCATTACATGACCCCAGAAGATTTTGTGCAGAAATACCTAGGACTTTATACAGATCCACGTTACAATCCTAAAACAGTACAGCTGTTGGCTGGAGTGGCAGATCAAACTAAAGATGG
Seq A exon
GTTGATTTCCTTTCAAGAATTTTTGGCATTTGAATCTGTTTTGTGTACTCCAGATGCAATATTCATTGTTGCTTTTCAGTTATTTGACAAGAGTGGCAATGGAGAAGTAACATTTG
Seq C2 exon
CAAATGTCAAAGAAGTATTTGAACAAACTACTACTCATCATCAAATCCCCTTCAATTGGGACTGTGAATTCATTCGTCTGCATTTTGGACATAACAGAAAGAAACACCTTAACTATACAGAGTTCACTCAGTTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009545_MULTIEX1-2/12=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(78.4=83.3)
A:
PF138331=EF-hand_8=PD(19.6=25.0),PF0003627=EF-hand_1=PU(65.5=47.5)
C2:
PF0003627=EF-hand_1=PD(31.0=19.1),PF134991=EF-hand_7=PU(43.9=53.2)
Main Skipping Isoform:
ENSGALT00000015535fB1632
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCCCAGAAGATTTTGTGCA
R:
CTGAAGAAACTGAGTGAACTCTG
Band lengths:
249-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]