MmuEX6102094 @ mm9
Exon Skipping
Gene
ENSMUSG00000027010 | Slc25a12
Description
solute carrier family 25 (mitochondrial carrier, Aralar), member 12 [Source:MGI Symbol;Acc:MGI:1926080]
Coordinates
chr2:71167797-71182089:-
Coord C1 exon
chr2:71181947-71182089
Coord A exon
chr2:71171662-71171777
Coord C2 exon
chr2:71167797-71168087
Length
116 bp
Sequences
Splice sites
3' ss Seq
CATTTTATATTTCGTTCCAGGTT
3' ss Score
9.9
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
TATGCCAGCACTGAGGTGGACGGGGAGCATTACATGACTCCAGAAGACTTCGTTCAACGCTATCTTGGCCTGTACAACGATCCAAACAGCAACCCAAAGATTGTGCAGCTCTTGGCAGGAGTAGCTGATCAAACCAAGGATGG
Seq A exon
GTTGATCTCCTATCAAGAGTTTTTGGCATTTGAATCTGTTCTATGTGCTCCAGATTCCATGTTCATAGTGGCTTTCCAACTGTTTGACAAGAGCGGAAATGGAGAGGTGACATTTG
Seq C2 exon
ATGGCCTGAGCCTTGTGGAGCCCGTTGCATGTGCTGGATACAGTGTCCATGTGCCGTGTCTCACTGTTACCCACTAGTGTCCTGGTATCCTGCTGGGTAGAATTAGGTAGCGGTAACCTGATCCCTGTCAAGTGGTAATACTGCATCCTGCTGTCATATGTTGCCTTGCATTGATCTTAAAAACTTTTAAAGAAGGTATTTATTGCTCTAACACAGATTGGATTCTAAAATCAATGAACATAATCAGAAGAAACTCTTACTTGTTTACTAATAAACATATATAAAACATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027010-'6-5,'6-4,12-5=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(68.1=100)
A:
PF134991=EF-hand_7=PD(14.5=25.0),PF0003627=EF-hand_1=PU(65.5=47.5)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACGGGGAGCATTACATG
R:
GGGATCAGGTTACCGCTACCT
Band lengths:
253-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: