GgaEX0014100 @ galGal3
Exon Skipping
Gene
ENSGALG00000009545 | F1P3D8_CHICK
Description
NA
Coordinates
chr7:19341556-19357687:+
Coord C1 exon
chr7:19341556-19341698
Coord A exon
chr7:19346373-19346488
Coord C2 exon
chr7:19357548-19357687
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTCTGTATTTCCCTTTGTAGGTT
3' ss Score
11.53
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
TATGCCAGTGTTGAGAAAGATGGAGAGCATTACATGACCCCAGAAGATTTTGTGCAGAAATACCTAGGACTTTATACAGATCCACGTTACAATCCTAAAACAGTACAGCTGTTGGCTGGAGTGGCAGATCAAACTAAAGATGG
Seq A exon
GTTGATTTCCTTTCAAGAATTTTTGGCATTTGAATCTGTTTTGTGTACTCCAGATGCAATATTCATTGTTGCTTTTCAGTTATTTGACAAGAGTGGCAATGGAGAAGTAACATTTG
Seq C2 exon
CAAATGTCAAAGAAGTATTTGAACAAACTACTACTCATCATCAAATCCCCTTCAATTGGGACTGTGAATTCATTCGTCTGCATTTTGGACATAACAGAAAGAAACACCTTAACTATACAGAGTTCACTCAGTTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009545-'2-6,'2-4,8-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.115 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(78.4=83.3)
A:
PF138331=EF-hand_8=PD(19.6=25.0),PF134991=EF-hand_7=PU(24.3=62.5)
C2:
PF134991=EF-hand_7=FE(44.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCCCAGAAGATTTTGTGCA
R:
CTGAAGAAACTGAGTGAACTCTG
Band lengths:
249-365
Functional annotations
There are 0 annotated functions for this event