BtaEX6009065 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016762 | SLC25A12
Description
Bos taurus solute carrier family 25 (mitochondrial carrier, Aralar), member 12 (SLC25A12), mRNA. [Source:RefSeq mRNA;Acc:NM_001101194]
Coordinates
chr2:24699213-24723421:+
Coord C1 exon
chr2:24699213-24699355
Coord A exon
chr2:24715049-24715164
Coord C2 exon
chr2:24723282-24723421
Length
116 bp
Sequences
Splice sites
3' ss Seq
TATTTTATATTTTATTCTAGGTT
3' ss Score
10.06
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
TATGCCAGTACTGAGGTTGATGGAGAACATTACATGACCCCGGAAGACTTTGTCCAGCGCTATCTTGGACTGTATAATGATCCAAATAGCAATCCGAAGATTGTGCAGCTCTTGGCAGGAGTAGCCGATCAAACCAAGGATGG
Seq A exon
GTTGATCTCCTATCAAGAGTTTTTGGCATTTGAATCTGTATTATGTGCTCCAGATTCCATGTTCATAGTGGCTTTCCAATTGTTTGACAAGAGTGGAAATGGAGAGGTGACATTTG
Seq C2 exon
AAAATGTCAAAGAAATTTTTGGACAGACTACTATTCACCATCATATCCCTTTTAATTGGGACTGTGAATTTATCCGGCTACATTTTGGGCATAATCGGAAGAAGCACCTTAACTACACAGAATTCACACAGTTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016762-'5-11,'5-5,6-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.004 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(68.1=100)
A:
PF134991=EF-hand_7=PD(14.5=25.0),PF0003627=EF-hand_1=PU(65.5=47.5)
C2:
PF0003627=EF-hand_1=PD(31.0=19.1),PF134991=EF-hand_7=PU(42.9=51.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAGTACTGAGGTTGATGGA
R:
GTGCTTCTTCCGATTATGCCCA
Band lengths:
248-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]