GgaEX0014098 @ galGal4
Exon Skipping
Gene
ENSGALG00000009545 | SLC25A12
Description
solute carrier family 25 (aspartate/glutamate carrier), member 12 [Source:HGNC Symbol;Acc:HGNC:10982]
Coordinates
chr7:17420556-17423150:+
Coord C1 exon
chr7:17420556-17420656
Coord A exon
chr7:17422110-17422195
Coord C2 exon
chr7:17423050-17423150
Length
86 bp
Sequences
Splice sites
3' ss Seq
ACTAGACCTTTATCTATTAGGCT
3' ss Score
4.47
5' ss Seq
AATGTATGA
5' ss Score
2.55
Exon sequences
Seq C1 exon
TGAGACATCGTATTTTTTGTTGTTCTCTCTGTGAATATAAGCTTTTCCTAGGTTTTTTTTTTTGGTCTGGGTAATACTGGAAGTGAGGTAATCAGATATGG
Seq A exon
GCTCATCCTTTGCCTGAAGTTGACTTTGCACGAAGTTGACTTTGCATCTGGAGAACCATTGTCTCATCTTTGATTTTATGGATAAT
Seq C2 exon
CGTTCCAGAGATGTCGTGAGAGCCCTGTCTGGTGATACTGCTGCTTCCTCATCTCGACTAAAAACAGGTCTCCTGATGCATCCTGAGTTGCATTTTTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009545-'8-6,'8-5,9-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000015535fB1632
Main Skipping Isoform:
ENSGALT00000015535fB1633
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGTTCTCTCTGTGAATATAAGCT
R:
TGCAACTCAGGATGCATCAGG
Band lengths:
176-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]