GgaALTD0006257-2/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000016138 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:107764947-107766313:-
Coord C1 exon
chr1:107766099-107766313
Coord A exon
chr1:107766024-107766098
Coord C2 exon
chr1:107764947-107765222
Length
75 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGA
5' ss Score
7.69
3' ss Seq
GTTCCTTTTTACTTTCCCAGGGC
3' ss Score
9.59
Exon sequences
Seq C1 exon
ATGGTACTCCCAAAATCATTTCTGCCTTCAGTGAGAAAGTGGTGAGTCCGGGCGAGCCAGTCTCCCTTATGTGCAATGTGAAGGGGACCCCCCTGCCTACCATCACTTGGACACTGGATGAAGATCCCATTGTGAAGGATGGCAGTCATCGCATCAGCCAGATTATCACCTCTGAAGGGAATGTGGTCAGTTACCTGAACATCTCTAACACTCAG
Seq A exon
GTCCGAGATGGTGGAGTTTATCGCTGTACTGCCAACAACTCTGCTGGAGTCGTCCTGTACCAGGCTCGAATAAAC
Seq C2 exon
GGCCAGCAAGCATTCGACCAATGAAAAACATCACAGCAATAGCAGGACGGGACACCTACATCCACTGCCGTGTAATAGGCTACCCATATTACTCCATCAAGTGGTACAAGAACTCTAACCTGCTACCCTTTAACCATCGTCAAGTGGCTTTTGAGAACAATGGGACATTGAAGCTTTCAGATGTGCAGAAGGAGGTAGATGAGGGTGAATACACATGTAATGTCCTCGTTCAGCCCCAGCTGTCCACCAGCCAGAGTGTTCATGTGACAGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016138-10-11,11-11,12-11-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=95.0)
A:
NA
C2:
PF0767911=I-set=WD(100=98.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATTGTGAAGGATGGCAGT
R:
TGGGTAGCCTATTACACGGCA
Band lengths:
176-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]