MmuALTD0004488-1/2 @ mm9

Alternative 5'ss

Gene

ENSMUSG00000050272 | Dscam

Description

Down syndrome cell adhesion molecule [Source:MGI Symbol;Acc:MGI:1196281]

Coordinates

chr16:97041331-97042646:-

Coord C1 exon

chr16:97042357-97042646

Coord A exon

NA

Coord C2 exon

chr16:97041331-97041606

Length

0 bp

Sequences

Splice sites

5' ss Seq

AACGTAAGA

5' ss Score

7.69

3' ss Seq

GCTTTCTTGTGTCTCTCCAGGGC

3' ss Score

11.81

Exon sequences

Seq C1 exon

ACGGAACTCCCAAAATCATTTCTGCCTTTAGCGAGAAAGTGGTGAGCCCGGCAGAGCCAGTGTCCCTCGTGTGCAATGTGAAGGGTACACCCTTGCCCACGGTCACCTGGACCCTGGACGATGACCCCATCCTCAAGGGCAGCGGTCACCGCATCAGCCAAATGATCACGTCCGAGGGGAACGTGGTCAGCTACCTGAATATCTCCAGCTCCCAGGTCCGGGATGGGGGTGTCTACCGCTGCACTGCCAACAACTCGGCTGGAGTCGTCCTGTACCAGGCTCGAATAAAC

Seq A exon

NA

Seq C2 exon

GGCCTGCAAGCATCAGACCAATGAAAAACATCACTGCGATAGCGGGGCGTGACACGTACATCCACTGCCGCGTAATTGGCTATCCGTATTACTCCATCAAGTGGTACAAGAACGCTAACCTGCTTCCTTTCAACCACCGCCAGGTGGCGTTTGAGAACAATGGGACTCTGAAACTCTCTGATGTGCAGAAAGAAGTTGACGAGGGAGAGTACACGTGTAATGTGCTGGTACAGCCACAGCTCTCCACCAGCCAGAGTGTCCACGTGACAGTGAAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000050272-8-6,9-6-1/2

Average complexity

Alt5

Mappability confidence:

NA

Protein Impact

ORF disruption when splice site is used (sequence exclusion)

No structure available

Features