RnoALTD0009579-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000027992 | Dscam
Description
DS cell adhesion molecule [Source:RGD Symbol;Acc:619992]
Coordinates
chr11:37240192-37241508:-
Coord C1 exon
chr11:37241219-37241508
Coord A exon
NA
Coord C2 exon
chr11:37240192-37240467
Length
0 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGA
5' ss Score
7.69
3' ss Seq
GTTTTCTTGTGTCTCTCCAGGGC
3' ss Score
12.19
Exon sequences
Seq C1 exon
ACGGAACTCCCAAAATCATTTCCGCCTTTAGCGAGAAAGTGGTGAGCCCGGCAGAGCCAGTGTCCCTCGTGTGTAATGTGAAGGGTACACCCTTGCCCACGGTCACCTGGACCCTGGACGATGACCCCATCCTCAAGGGCAGCGGCCACCGCATCAGCCAAATGATCACGTCCGAGGGGAACGTGGTCAGCTACCTGAATATCTCCAGCTCCCAGGTCCGGGATGGGGGTGTCTACCGCTGCACTGCCAACAACTCGGCTGGAGTCGTCCTGTACCAGGCTCGAATAAAC
Seq A exon
NA
Seq C2 exon
GGCCGGCAAGCATCAGACCGATGAAAAACATCACTGCGATAGCAGGGCGTGACACGTACATCCACTGCCGTGTGATTGGCTACCCTTATTACTCCATCAAGTGGTACAAGAACGCTAACCTGCTTCCTTTCAACCACCGCCAGGTGGCGTTTGAGAACAATGGGACTCTGAAACTCTCAGATGTGCAGAAAGAAGTTGACGAGGGAGAGTACACATGTAACGTGCTGGTGCAGCCACAGCTCTCCACCAGCCAGAGTGTCCACGTGACAGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027992-7-4,8-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=95.0)
A:
NA
C2:
PF0767911=I-set=WD(100=96.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGTCGTCCTGTACCAG
R:
GGCAGTGGATGTACGTGTCAC
Band lengths:
102-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]